STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcin_3330Conjugative transfer protein TraN. (566 aa)    
Predicted Functional Partners:
msrA_2
Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.986
Lcin_3328
Conjugative transfer protein.
 
     0.949
Lcin_3329
Conjugative transfer protein TraF.
     0.949
traH
TraH pilus assembly protein.
 
     0.948
traW
Type-F conjugative transfer system protein.
 
     0.946
Lcin_3337
Conjugative transfer protein TraB.
 
     0.946
traG
Mating contact stabilization protein TraG.
 
     0.944
Lcin_3332
Conjugative transfer protein TraU.
 
     0.943
traC_2
F pilus assembly protein TraC.
 
     0.943
traE
Type IV conjugative transfer system protein TraE.
 
     0.941
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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