STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traL_2Type IV conjugative transfer system protein TraL, proteobacteria. (98 aa)    
Predicted Functional Partners:
traW
Type-F conjugative transfer system protein.
       0.834
Lcin_3337
Conjugative transfer protein TraB.
       0.834
Lcin_3341
Hypothetical protein.
       0.834
Lcin_3330
Conjugative transfer protein TraN.
       0.822
Lcin_3331
Conjugative transfer protein.
       0.821
Lcin_3332
Conjugative transfer protein TraU.
       0.779
traC_2
F pilus assembly protein TraC.
       0.776
Lcin_3338
Conjugative transfer protein TraK.
       0.775
trbI
F pilus extension/retraction protein TrbI Inner membrane protein.
       0.771
Lcin_3336
Conjugative transfer protein.
       0.771
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.