STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lvrBHypothetical protein. (127 aa)    
Predicted Functional Partners:
IvrA
Hypothetical protein.
       0.777
Lcin_3341
Hypothetical protein.
       0.771
csrA
Pleiotropic regulatory protein for carbon source metabolism (modular protein); A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is an [...]
       0.766
Lcin_3337
Conjugative transfer protein TraB.
       0.760
traL_2
Type IV conjugative transfer system protein TraL, proteobacteria.
       0.760
Lcin_3332
Conjugative transfer protein TraU.
       0.754
traC_2
F pilus assembly protein TraC.
       0.751
Lcin_3338
Conjugative transfer protein TraK.
       0.745
traE
Type IV conjugative transfer system protein TraE.
       0.745
traW
Type-F conjugative transfer system protein.
       0.744
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.