STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pknDSerine/threonine protein kinase. (600 aa)    
Predicted Functional Partners:
celC
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.794
Lcin_1920
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
     0.709
bcp
Acetylpolyamine aminohydrolase.
  
     0.705
Lcin_2152
Hypothetical protein.
  
     0.698
Lcin_1157
Calcium-transporting ATPase.
  
     0.697
Lcin_3423
Putative solute carrier protein.
  
     0.679
Lcin_1019
Putative secreted esterase.
  
     0.665
Lcin_2218
Hypothetical protein.
  
     0.663
Lcin_0492
Protein phosphatase 2C.
  
   0.661
pieE_1
Substrate of the Dot/Icm secretion system.
  
     0.653
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.