Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lsai_0002PPR repeat protein. (420 aa)    
Predicted Functional Partners:
Lsai_2426
Hypothetical protein.
  
     0.761
Lsai_2342
Sid related protein.
 
 
 
 0.742
Lsai_0828
U-box domain protein.
  
     0.707
Lsai_2320
Coiled-coil protein.
  
     0.690
Lsai_0155
7-dehydrocholesterol reductase.
 
     0.670
Lsai_1291
PPR repeat protein.
 
 
0.615
Lsai_3483
PPR repeat protein.
 
 
0.613
qmcA_2
Protease.
  
 
  0.598
Lsai_1704
Sensory box histidine kinase/response regulator.
   
 
 0.545
Lsai_3119
Sensory histidine-kinase / response regulator.
   
 
 0.545
Your Current Organism:
Legionella sainthelensi
NCBI taxonomy Id: 28087
Other names: ATCC 35248, CCUG 29672, CIP 103885, DSM 19231, L. sainthelensi, NCTC 11988, strain MSH-4, strain Mt. St. Helens 4
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