Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsai_0496 | fleS | Lsai_0496 | Lsai_0495 | Protein kinase domain containing protein. | Sensor histidine kinase. | 0.528 |
Lsai_0496 | ftsK | Lsai_0496 | Lsai_0499 | Protein kinase domain containing protein. | DNA translocase FtsK. | 0.521 |
Lsai_0496 | lolA | Lsai_0496 | Lsai_0498 | Protein kinase domain containing protein. | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.521 |
Lsai_0496 | ycaJ | Lsai_0496 | Lsai_0497 | Protein kinase domain containing protein. | Recombination protein. | 0.521 |
fleS | Lsai_0496 | Lsai_0495 | Lsai_0496 | Sensor histidine kinase. | Protein kinase domain containing protein. | 0.528 |
fleS | ftsK | Lsai_0495 | Lsai_0499 | Sensor histidine kinase. | DNA translocase FtsK. | 0.495 |
fleS | ycaJ | Lsai_0495 | Lsai_0497 | Sensor histidine kinase. | Recombination protein. | 0.405 |
ftsK | Lsai_0496 | Lsai_0499 | Lsai_0496 | DNA translocase FtsK. | Protein kinase domain containing protein. | 0.521 |
ftsK | fleS | Lsai_0499 | Lsai_0495 | DNA translocase FtsK. | Sensor histidine kinase. | 0.495 |
ftsK | lolA | Lsai_0499 | Lsai_0498 | DNA translocase FtsK. | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.833 |
ftsK | polA | Lsai_0499 | Lsai_2449 | DNA translocase FtsK. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.576 |
ftsK | trxB | Lsai_0499 | Lsai_0500 | DNA translocase FtsK. | Thioredoxin reductase. | 0.657 |
ftsK | ycaJ | Lsai_0499 | Lsai_0497 | DNA translocase FtsK. | Recombination protein. | 0.830 |
lolA | Lsai_0496 | Lsai_0498 | Lsai_0496 | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Protein kinase domain containing protein. | 0.521 |
lolA | ftsK | Lsai_0498 | Lsai_0499 | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | DNA translocase FtsK. | 0.833 |
lolA | nadE | Lsai_0498 | Lsai_2044 | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.693 |
lolA | trxB | Lsai_0498 | Lsai_0500 | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Thioredoxin reductase. | 0.681 |
lolA | ycaJ | Lsai_0498 | Lsai_0497 | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Recombination protein. | 0.811 |
nadE | lolA | Lsai_2044 | Lsai_0498 | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.693 |
nadE | ycaJ | Lsai_2044 | Lsai_0497 | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Recombination protein. | 0.540 |
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