STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsai_0803Eukaryotic small stress protein PASS1. (317 aa)    
Predicted Functional Partners:
Lsai_1949
Protein kinase.
  
     0.731
Lsai_2009
Hypothetical protein.
  
     0.728
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.725
Lsai_0823
Ankyrin repeat protein.
  
     0.724
spkD
Serine/threonine-protein kinase D.
  
     0.710
Lsai_3042
Putative aminoglycoside phosphotransferase.
  
     0.683
Lsai_2101
Hypothetical protein; Belongs to the UPF0145 family.
  
     0.681
Lsai_1689
Carbohydrate-selective porin, OprB family.
  
     0.680
Lsai_1731
Ankyrin repeat family protein.
  
     0.672
Lsai_0542
Ankyrin repeat protein.
  
     0.656
Your Current Organism:
Legionella sainthelensi
NCBI taxonomy Id: 28087
Other names: ATCC 35248, CCUG 29672, CIP 103885, DSM 19231, L. sainthelensi, NCTC 11988, strain MSH-4, strain Mt. St. Helens 4
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