Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lsai_0806Hypothetical protein. (181 aa)    
Predicted Functional Partners:
Lsai_3169
Hypothetical protein.
  
     0.747
himD
Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.700
Lsai_2192
Hypothetical protein.
  
     0.671
Lsai_3148
Zinc-iron permease (ZIP) family metal cation transporter.
 
     0.650
Lsai_2066
Enhanced entry protein EnhA.
  
     0.593
Lsai_0256
uracil-DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.
 
     0.581
lvrA_1
Protein LvrA.
  
     0.562
dotA
Defect in organelle trafficking protein DotA.
  
    0.546
Lsai_1142
Putative membrane protein YdgA-like protein.
 
     0.540
Lsai_0392
Tubulin-tyrosine ligase family protein.
  
     0.539
Your Current Organism:
Legionella sainthelensi
NCBI taxonomy Id: 28087
Other names: ATCC 35248, CCUG 29672, CIP 103885, DSM 19231, L. sainthelensi, NCTC 11988, strain MSH-4, strain Mt. St. Helens 4
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