Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsai_0294 | Lsai_0854 | Lsai_0294 | Lsai_0854 | Hypothetical protein. | 6-pyruvoyl tetrahydropterin synthase. | 0.679 |
Lsai_0294 | Lsai_3070 | Lsai_0294 | Lsai_3070 | Hypothetical protein. | Phage repressor. | 0.697 |
Lsai_0294 | lvrA_1 | Lsai_0294 | Lsai_2399 | Hypothetical protein. | Protein LvrA. | 0.745 |
Lsai_0294 | prpA | Lsai_0294 | Lsai_3167 | Hypothetical protein. | Phage repressor. | 0.739 |
Lsai_0853 | Lsai_0854 | Lsai_0853 | Lsai_0854 | Hypothetical protein. | 6-pyruvoyl tetrahydropterin synthase. | 0.788 |
Lsai_0853 | phaB_2 | Lsai_0853 | Lsai_0852 | Hypothetical protein. | Pteridine reductase. | 0.600 |
Lsai_0854 | Lsai_0294 | Lsai_0854 | Lsai_0294 | 6-pyruvoyl tetrahydropterin synthase. | Hypothetical protein. | 0.679 |
Lsai_0854 | Lsai_0853 | Lsai_0854 | Lsai_0853 | 6-pyruvoyl tetrahydropterin synthase. | Hypothetical protein. | 0.788 |
Lsai_0854 | Lsai_3070 | Lsai_0854 | Lsai_3070 | 6-pyruvoyl tetrahydropterin synthase. | Phage repressor. | 0.761 |
Lsai_0854 | folE | Lsai_0854 | Lsai_0980 | 6-pyruvoyl tetrahydropterin synthase. | GTP cyclohydrolase I. | 0.977 |
Lsai_0854 | lvrA_1 | Lsai_0854 | Lsai_2399 | 6-pyruvoyl tetrahydropterin synthase. | Protein LvrA. | 0.712 |
Lsai_0854 | phaB_2 | Lsai_0854 | Lsai_0852 | 6-pyruvoyl tetrahydropterin synthase. | Pteridine reductase. | 0.714 |
Lsai_0854 | prpA | Lsai_0854 | Lsai_3167 | 6-pyruvoyl tetrahydropterin synthase. | Phage repressor. | 0.702 |
Lsai_0854 | queC | Lsai_0854 | Lsai_0881 | 6-pyruvoyl tetrahydropterin synthase. | Transcriptional regulator ExsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. | 0.845 |
Lsai_0854 | queE | Lsai_0854 | Lsai_3425 | 6-pyruvoyl tetrahydropterin synthase. | Radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.983 |
Lsai_0854 | queF | Lsai_0854 | Lsai_1022 | 6-pyruvoyl tetrahydropterin synthase. | GTP cyclohydrolase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.820 |
Lsai_3070 | Lsai_0294 | Lsai_3070 | Lsai_0294 | Phage repressor. | Hypothetical protein. | 0.697 |
Lsai_3070 | Lsai_0854 | Lsai_3070 | Lsai_0854 | Phage repressor. | 6-pyruvoyl tetrahydropterin synthase. | 0.761 |
Lsai_3070 | lvrA_1 | Lsai_3070 | Lsai_2399 | Phage repressor. | Protein LvrA. | 0.736 |
folE | Lsai_0854 | Lsai_0980 | Lsai_0854 | GTP cyclohydrolase I. | 6-pyruvoyl tetrahydropterin synthase. | 0.977 |
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