STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsai_1465Acyl-CoA N-acyltransferase. (274 aa)    
Predicted Functional Partners:
Lsai_1463
Hypothetical protein.
       0.773
Lsai_1464
Hypothetical protein.
       0.773
Lsai_0395
GNAT family acetyltransferase.
  
     0.731
Lsai_3042
Putative aminoglycoside phosphotransferase.
 
    0.597
Lsai_2263
Phosphotransferase enzyme family protein.
  
     0.542
Lsai_1689
Carbohydrate-selective porin, OprB family.
  
     0.460
lysAC
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.450
Lsai_0823
Ankyrin repeat protein.
  
     0.438
rsmA
Ribosomal RNA small subunit methyltransferase A; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
  
     0.423
Lsai_1731
Ankyrin repeat family protein.
  
     0.417
Your Current Organism:
Legionella sainthelensi
NCBI taxonomy Id: 28087
Other names: ATCC 35248, CCUG 29672, CIP 103885, DSM 19231, L. sainthelensi, NCTC 11988, strain MSH-4, strain Mt. St. Helens 4
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