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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsai_1997Toxin secretion ABC transporter ATP-binding protein. (522 aa)    
Predicted Functional Partners:
Lsai_1998
Putative membrane fusion protein.
 
 0.972
Lsai_1999
Outer membrane component of multidrug efflux pump.
 
  
 0.955
Lsai_1996
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.741
Lsai_1994
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.675
Lsai_1992
Hypothetical protein.
 
     0.670
Lsai_3251
Multidrug resistance protein MdtN.
 
 
 0.652
Lsai_1995
NADH-ubiquinone oxidoreductase chain 5.
 
    0.577
Lsai_2867
Cytochrome c type biogenesis protein CycH.
  
     0.543
Lsai_3050
Membrane protein.
  
     0.532
Lsai_3053
Type IV secretory protein VirB4 component.
  
    0.524
Your Current Organism:
Legionella sainthelensi
NCBI taxonomy Id: 28087
Other names: ATCC 35248, CCUG 29672, CIP 103885, DSM 19231, L. sainthelensi, NCTC 11988, strain MSH-4, strain Mt. St. Helens 4
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