Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsai_0148 | argF | Lsai_0148 | Lsai_0639 | Chorismate mutase. | Ornithine carbamoyltransferase. | 0.428 |
Lsai_0148 | lysAC | Lsai_0148 | Lsai_2917 | Chorismate mutase. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.563 |
Lsai_0148 | proA_2 | Lsai_0148 | Lsai_2817 | Chorismate mutase. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.526 |
Lsai_0148 | proB | Lsai_0148 | Lsai_2816 | Chorismate mutase. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.471 |
Lsai_0148 | putA | Lsai_0148 | Lsai_0251 | Chorismate mutase. | Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.498 |
Lsai_0148 | ribA | Lsai_0148 | Lsai_0614 | Chorismate mutase. | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.466 |
Lsai_0746 | proA_2 | Lsai_0746 | Lsai_2817 | DNA internalization-related competence protein ComEC/Rec2. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.463 |
Lsai_0746 | proB | Lsai_0746 | Lsai_2816 | DNA internalization-related competence protein ComEC/Rec2. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.458 |
Lsai_0746 | proC | Lsai_0746 | Lsai_2973 | DNA internalization-related competence protein ComEC/Rec2. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.487 |
Lsai_0746 | ribA | Lsai_0746 | Lsai_0614 | DNA internalization-related competence protein ComEC/Rec2. | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.492 |
Lsai_2815 | proA_2 | Lsai_2815 | Lsai_2817 | Hypothetical protein. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.503 |
Lsai_2815 | proB | Lsai_2815 | Lsai_2816 | Hypothetical protein. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.511 |
Lsai_2818 | proA_2 | Lsai_2818 | Lsai_2817 | Sodium/hydrogen exchanger. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.513 |
Lsai_2818 | proB | Lsai_2818 | Lsai_2816 | Sodium/hydrogen exchanger. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.506 |
argF | Lsai_0148 | Lsai_0639 | Lsai_0148 | Ornithine carbamoyltransferase. | Chorismate mutase. | 0.428 |
argF | lysAC | Lsai_0639 | Lsai_2917 | Ornithine carbamoyltransferase. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.564 |
argF | proA_2 | Lsai_0639 | Lsai_2817 | Ornithine carbamoyltransferase. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.498 |
argF | proB | Lsai_0639 | Lsai_2816 | Ornithine carbamoyltransferase. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.474 |
argF | proC | Lsai_0639 | Lsai_2973 | Ornithine carbamoyltransferase. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.481 |
argF | putA | Lsai_0639 | Lsai_0251 | Ornithine carbamoyltransferase. | Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.452 |
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