Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsai_2944 | fleN | Lsai_2944 | Lsai_2942 | Hypothetical protein. | Flagellar synthesis regulator. | 0.470 |
Lsai_2944 | fliA | Lsai_2944 | Lsai_2943 | Hypothetical protein. | Sigma factor 28; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.478 |
Lsai_2944 | lysS | Lsai_2944 | Lsai_2946 | Hypothetical protein. | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.427 |
Lsai_2944 | prfB | Lsai_2944 | Lsai_2945 | Hypothetical protein. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.427 |
fleN | Lsai_2944 | Lsai_2942 | Lsai_2944 | Flagellar synthesis regulator. | Hypothetical protein. | 0.470 |
fleN | fliA | Lsai_2942 | Lsai_2943 | Flagellar synthesis regulator. | Sigma factor 28; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.983 |
fliA | Lsai_2944 | Lsai_2943 | Lsai_2944 | Sigma factor 28; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | Hypothetical protein. | 0.478 |
fliA | fleN | Lsai_2943 | Lsai_2942 | Sigma factor 28; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | Flagellar synthesis regulator. | 0.983 |
lysS | Lsai_2944 | Lsai_2946 | Lsai_2944 | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Hypothetical protein. | 0.427 |
lysS | prfB | Lsai_2946 | Lsai_2945 | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.948 |
prfB | Lsai_2944 | Lsai_2945 | Lsai_2944 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Hypothetical protein. | 0.427 |
prfB | lysS | Lsai_2945 | Lsai_2946 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.948 |