STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIU17023.1AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)    
Predicted Functional Partners:
KIU16673.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.916
KIU17522.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.891
KIU16726.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.877
KIU18616.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.854
KIU17021.1
Poly(3-hydroxyalkanoate) depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.836
KIU17575.1
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  0.800
KIU17022.1
Poly(3-hydroxyalkanoate) polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.770
KIU17851.1
Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.721
KIU17523.1
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.703
Your Current Organism:
Mycolicibacterium llatzerense
NCBI taxonomy Id: 280871
Other names: CCUG 54744, CECT 7273, DSM 45343, JCM 16229, M. llatzerense, Mycobacterium llatzerense, Mycobacterium llatzerense Gomila et al. 2008, Mycobacterium sp. 13-009-09768, Mycobacterium sp. MG12, Mycobacterium sp. MG13, Mycobacterium sp. MG14, Mycobacterium sp. MG15, Mycobacterium sp. MG16, Mycobacterium sp. MG18, Mycolicibacterium llatzerense (Gomila et al. 2008) Gupta et al. 2018, strain MG13
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