Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SAY50221.1 | carA | SAMEA3174300_00085 | SAMEA3174300_01975 | Protein Pglb2. | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | 0.991 |
SAY50221.1 | carB | SAMEA3174300_00085 | SAMEA3174300_01991 | Protein Pglb2. | Carbamoyl phosphate synthase large subunit; Belongs to the CarB family. | 0.900 |
SAY50221.1 | guaA | SAMEA3174300_00085 | SAMEA3174300_00499 | Protein Pglb2. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.690 |
SAY50221.1 | purL | SAMEA3174300_00085 | SAMEA3174300_00642 | Protein Pglb2. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.544 |
SAY50221.1 | pyrB | SAMEA3174300_00085 | SAMEA3174300_01609 | Protein Pglb2. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.974 |
SAY50221.1 | pyrC | SAMEA3174300_00085 | SAMEA3174300_00336 | Protein Pglb2. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. | 0.483 |
SAY50221.1 | pyrD | SAMEA3174300_00085 | SAMEA3174300_00004 | Protein Pglb2. | Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.768 |
SAY50221.1 | pyrE | SAMEA3174300_00085 | SAMEA3174300_02034 | Protein Pglb2. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.770 |
SAY50221.1 | pyrF | SAMEA3174300_00085 | SAMEA3174300_00220 | Protein Pglb2. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.754 |
carA | SAY50221.1 | SAMEA3174300_01975 | SAMEA3174300_00085 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | Protein Pglb2. | 0.991 |
carA | carB | SAMEA3174300_01975 | SAMEA3174300_01991 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | Carbamoyl phosphate synthase large subunit; Belongs to the CarB family. | 0.999 |
carA | guaA | SAMEA3174300_01975 | SAMEA3174300_00499 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.508 |
carA | pheT | SAMEA3174300_01975 | SAMEA3174300_01035 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.405 |
carA | purL | SAMEA3174300_01975 | SAMEA3174300_00642 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.963 |
carA | pyrB | SAMEA3174300_01975 | SAMEA3174300_01609 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carA | pyrC | SAMEA3174300_01975 | SAMEA3174300_00336 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. | 0.491 |
carA | pyrD | SAMEA3174300_01975 | SAMEA3174300_00004 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.910 |
carA | pyrE | SAMEA3174300_01975 | SAMEA3174300_02034 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.870 |
carA | pyrF | SAMEA3174300_01975 | SAMEA3174300_00220 | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.876 |
carB | SAY50221.1 | SAMEA3174300_01991 | SAMEA3174300_00085 | Carbamoyl phosphate synthase large subunit; Belongs to the CarB family. | Protein Pglb2. | 0.900 |
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