STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smgProtein smg-like protein; Belongs to the Smg family. (150 aa)    
Predicted Functional Partners:
smf
SMF-family protein.
     
 0.811
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
   
 0.723
SAY50398.1
Protein of uncharacterised function (DUF721).
  
     0.714
SAY50450.1
ProP expression regulator.
  
     0.702
SAY50205.1
Uncharacterized protein conserved in bacteria.
  
     0.701
SAY50302.1
Secreted protein.
  
     0.699
SAY51121.1
Protein of uncharacterised function (DUF3460).
  
     0.680
SAY51970.1
Putative peptidoglycan-binding periplasmic protein.
 
     0.646
SAY50305.1
Putative cell division protein FtsN.
  
     0.615
SAY50372.1
Secreted protein.
  
     0.609
Your Current Organism:
Neisseria weaveri
NCBI taxonomy Id: 28091
Other names: ATCC 51223, ATCC 51410, CCM 4588, CCUG 30799, CCUG 33675, CCUG 4007, CDC 8142, CDC group M-5, CIP 103940, DSM 17688, LMG 5135, LMG:5135, N. weaveri, NCTC 12742, strain ISL775/91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.