Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KKB63167.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (605 aa)    
Predicted Functional Partners:
KKB63229.1
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.923
KKB62822.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.764
KKB61969.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.745
KKB62213.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.721
KKB65151.1
IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
KKB63226.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.694
KKB64501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
KKB63781.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.687
KKB62733.1
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
KKB62371.1
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.642
Your Current Organism:
Robbsia andropogonis
NCBI taxonomy Id: 28092
Other names: ATCC 19311 [[Pseudomonas woodsii]], ATCC 23061, Aplanobacter stizolobii, Bacterium andropogoni, Bacterium woodsii, Burkholderia andropogonis, CCUG 32772, CFBP 2421, CIP 105771, DSM 9511, DSM 9884 [[Pseudomonas woodsii]], IBSBF 199, ICMP 2807, ICMP 3967 [[Pseudomonas woodsii]], JCM 10487, LMG 2129, LMG 2362 [[Pseudomonas woodsii]], LMG:2129, LMG:2362 [[Pseudomonas woodsii]], NCPPB 934, NCPPB 968 [[Pseudomonas woodsii]], NRRL B-14296, Paraburkholderia andropogonis, Pseudomonas andropogonis, Pseudomonas stizolobii, Pseudomonas woodsii, R. andropogonis, strain PW 102 [[Pseudomonas woodsii]]
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