STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SME94707.1Type VI secretion system protein ImpC. (496 aa)    
Predicted Functional Partners:
SME94698.1
Type VI secretion system protein ImpB.
 0.999
SME94715.1
Type VI secretion system secreted protein Hcp.
 0.995
SMF62428.1
Type VI secretion system protein ImpB.
 
 0.995
SMF62512.1
Type VI secretion system secreted protein Hcp.
 0.982
SME94749.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 0.969
SMF09252.1
Type VI secretion system secreted protein Hcp.
 
 0.956
SME94668.1
Type VI secretion system protein ImpK.
 
  
 0.955
SME94743.1
Type VI secretion system protein ImpH.
 
 
 0.931
SMF62528.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 0.931
SMF62491.1
Type VI secretion system protein ImpK.
 
  
 0.929
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.