STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SME94833.1Type VI secretion system protein ImpL. (1293 aa)    
Predicted Functional Partners:
SME94782.1
OmpA-OmpF porin, OOP family.
  
 0.982
SME94812.1
Type VI secretion system protein ImpM.
 
  
 0.945
SME94848.1
Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK.
 
   
 0.913
SME94707.1
Type VI secretion system protein ImpC.
 
 
 0.893
SMF09258.1
Type VI secretion protein, EvpB/VC_A0108 family/type VI secretion protein, VC_A0107 family.
 
 
 0.890
SME94698.1
Type VI secretion system protein ImpB.
 
 
 0.882
SMF62418.1
Type VI secretion system protein ImpC.
 
 
 0.874
SME94674.1
Type VI secretion system protein ImpJ.
 
 
 0.867
SMF62476.1
Type VI secretion system protein ImpJ.
 
 
 0.864
SME94715.1
Type VI secretion system secreted protein Hcp.
 
 
 0.857
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.