STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SME98749.1P-hydroxybenzoate 3-monooxygenase. (392 aa)    
Predicted Functional Partners:
SME98733.1
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
  
 0.934
SME98726.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
  
 0.933
SMF49983.1
Protocatechuate 4,5-dioxygenase beta subunit.
 
  
 0.839
SME98673.1
4-carboxymuconolactone decarboxylase.
 
   
 0.810
SMF55660.1
Acyl carrier protein.
  
 0.799
SME98680.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.796
SMF83589.1
AMP-binding enzyme.
  
 0.794
SMF05368.1
4-hydroxyphenylpyruvate dioxygenase.
 
 
 0.781
SMF83721.1
AMP-binding enzyme.
  
 0.768
SMF49998.1
Protocatechuate 4,5-dioxygenase alpha subunit.
 
  
 0.727
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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