STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF07187.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (311 aa)    
Predicted Functional Partners:
SMF71224.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.685
SMF70867.1
LysR family transcriptional regulator, nitrogen assimilation regulatory protein.
  
     0.674
SMF53773.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.673
SMF56078.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.672
SME98689.1
Pca operon transcription factor PcaQ; Belongs to the LysR transcriptional regulatory family.
  
     0.669
SMF65915.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.658
SMF73585.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.642
SMF58403.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.620
SMF83545.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.602
SMF15746.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.591
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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