STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF03970.1Outer membrane protein (porin). (392 aa)    
Predicted Functional Partners:
SMF60301.1
4-amino-4-deoxy-L-arabinose transferase.
  
     0.737
SMF48565.1
Protein of unknown function.
  
     0.720
SMF33422.1
Hypothetical protein.
  
     0.707
SMF48488.1
Thioredoxin.
  
 
   0.681
SMF38532.1
Lipopolysaccharide export system protein LptC.
  
     0.673
SMF36125.1
Outer membrane protein (porin).
  
  
 
0.673
SMF30190.1
Outer membrane protein (porin).
  
  
 
0.670
SME97416.1
Outer membrane protein (porin).
  
  
 
0.669
SMF76815.1
Outer membrane protein (porin).
  
  
 
0.669
SMF57459.1
Outer membrane protein (porin).
  
  
 
0.668
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.