STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF17848.1Multimeric flavodoxin WrbA. (184 aa)    
Predicted Functional Partners:
SME99674.1
NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family.
  
  
 
0.720
SME94152.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.711
SMF70475.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.711
SMF57467.1
NAD(P)H dehydrogenase (quinone).
    
 0.700
SMF76970.1
BON domain-containing protein.
   
    0.693
SMF79423.1
Putative serine protein kinase, PrkA.
   
    0.680
SMF52716.1
D-mannose binding lectin.
   
  
 0.660
SMF66630.1
Hypothetical protein.
   
  
 0.660
SMF62647.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
    
  0.625
SME94140.1
Catalase; Belongs to the catalase family.
  
  
 0.624
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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