Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMF13816.1 | SMF14345.1 | SAMN06295900_10368 | SAMN06295900_103102 | L-glutamine synthetase. | Dihydrolipoamide dehydrogenase. | 0.770 |
SMF13816.1 | SMF28881.1 | SAMN06295900_10368 | SAMN06295900_10522 | L-glutamine synthetase. | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | 0.759 |
SMF13816.1 | SMF32613.1 | SAMN06295900_10368 | SAMN06295900_105286 | L-glutamine synthetase. | Mo-nitrogenase MoFe protein subunit NifK; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. | 0.861 |
SMF13816.1 | SMF45810.1 | SAMN06295900_10368 | SAMN06295900_107157 | L-glutamine synthetase. | Glutamate synthase (NADH) large subunit. | 0.951 |
SMF13816.1 | SMF73187.1 | SAMN06295900_10368 | SAMN06295900_11779 | L-glutamine synthetase. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.778 |
SMF13816.1 | SMF83589.1 | SAMN06295900_10368 | SAMN06295900_1361 | L-glutamine synthetase. | AMP-binding enzyme. | 0.768 |
SMF13816.1 | SMF83721.1 | SAMN06295900_10368 | SAMN06295900_1381 | L-glutamine synthetase. | AMP-binding enzyme. | 0.809 |
SMF13816.1 | gcvP | SAMN06295900_10368 | SAMN06295900_11720 | L-glutamine synthetase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.777 |
SMF13816.1 | glnE | SAMN06295900_10368 | SAMN06295900_101197 | L-glutamine synthetase. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.777 |
SMF13816.1 | purL | SAMN06295900_10368 | SAMN06295900_12156 | L-glutamine synthetase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.747 |
SMF14345.1 | SMF13816.1 | SAMN06295900_103102 | SAMN06295900_10368 | Dihydrolipoamide dehydrogenase. | L-glutamine synthetase. | 0.770 |
SMF14345.1 | SMF28881.1 | SAMN06295900_103102 | SAMN06295900_10522 | Dihydrolipoamide dehydrogenase. | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | 0.983 |
SMF14345.1 | SMF45810.1 | SAMN06295900_103102 | SAMN06295900_107157 | Dihydrolipoamide dehydrogenase. | Glutamate synthase (NADH) large subunit. | 0.797 |
SMF14345.1 | SMF73187.1 | SAMN06295900_103102 | SAMN06295900_11779 | Dihydrolipoamide dehydrogenase. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.805 |
SMF14345.1 | SMF83589.1 | SAMN06295900_103102 | SAMN06295900_1361 | Dihydrolipoamide dehydrogenase. | AMP-binding enzyme. | 0.886 |
SMF14345.1 | SMF83721.1 | SAMN06295900_103102 | SAMN06295900_1381 | Dihydrolipoamide dehydrogenase. | AMP-binding enzyme. | 0.887 |
SMF14345.1 | gcvP | SAMN06295900_103102 | SAMN06295900_11720 | Dihydrolipoamide dehydrogenase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.976 |
SMF14345.1 | purL | SAMN06295900_103102 | SAMN06295900_12156 | Dihydrolipoamide dehydrogenase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.852 |
SMF28881.1 | SMF13816.1 | SAMN06295900_10522 | SAMN06295900_10368 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | L-glutamine synthetase. | 0.759 |
SMF28881.1 | SMF14345.1 | SAMN06295900_10522 | SAMN06295900_103102 | Sarcosine oxidase subunit alpha; Belongs to the GcvT family. | Dihydrolipoamide dehydrogenase. | 0.983 |
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