STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF21634.1Branched-chain amino acid transport protein. (107 aa)    
Predicted Functional Partners:
SMF21647.1
4-azaleucine resistance probable transporter AzlC.
 
  
 0.984
SMF41220.1
Predicted branched-chain amino acid permease (azaleucine resistance).
 
  
 0.859
SMF23507.1
HDOD domain-containing protein.
  
     0.562
SMF21659.1
Transcriptional regulator, AraC family.
 
     0.561
ycgR
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
     0.497
SME98259.1
Uncharacterized membrane protein.
  
     0.452
SME99341.1
Protein of unknown function.
  
     0.450
SME96248.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
  
     0.432
SMF21622.1
Protein of unknown function.
       0.422
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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