STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF32029.1Type III secretion protein C. (590 aa)    
Predicted Functional Partners:
SMF09760.1
Type III secretion protein S.
 
 
 0.941
SMF31885.1
Type III secretion protein S.
 
 
 0.938
SMF09591.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.932
SMF24534.1
Type III secretion protein J.
 
 
 0.930
SMF31825.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.924
SMF53441.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.923
SMF41597.1
Type III secretion protein J.
 
 
 0.922
SMF31689.1
Type III secretion protein T.
 
 
 0.916
SMF24337.1
Type III secretion protein T.
 
 
 0.915
SMF09495.1
Type III secretion protein T.
 
 
 0.908
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.