STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF34196.1Transcriptional regulator, GntR family. (265 aa)    
Predicted Functional Partners:
SMF34214.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.730
SMF34177.1
Succinate dehydrogenase subunit D.
 
     0.691
SMF34185.1
Succinate dehydrogenase subunit C.
 
     0.683
SMF14350.1
Phasin family protein.
  
     0.629
SMF30251.1
Phosphocarrier protein HPr.
    
 0.574
SMF38183.1
Phosphocarrier protein HPr.
    
 0.574
SMF40484.1
Transcriptional regulator, GntR family.
  
    0.574
SMF58098.1
Transcriptional regulator, GntR family.
  
    0.573
SMF63952.1
Transcriptional regulator, XRE family with cupin sensor.
  
  
 0.572
SMF76768.1
Transcriptional regulator, XRE family with cupin sensor.
  
  
 0.572
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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