STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF28563.1Rieske 2Fe-2S family protein. (416 aa)    
Predicted Functional Partners:
SMF28557.1
Ferredoxin-NADP reductase.
 
 0.996
SME99586.1
Anthranilate 1,2-dioxygenase.
 
 0.953
SMF67394.1
Benzoate 1,2-dioxygenase, beta subunit.
 
 0.951
SMF28881.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 
 0.948
SMF82458.1
V4R domain-containing protein.
 
    0.945
SMF28892.1
Sarcosine oxidase subunit delta.
 
    0.936
SMF82442.1
Electron transfer flavoprotein beta subunit.
 
    0.933
SMF82452.1
Fe-S oxidoreductase.
 
  
 0.926
SMF82455.1
2,4-dienoyl-CoA reductase.
 
 
 0.926
SMF28871.1
Sarcosine oxidase subunit gamma.
 
  
 0.924
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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