STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF41469.1Type III secretion protein D. (403 aa)    
Predicted Functional Partners:
SMF66154.1
2-oxoglutarate dehydrogenase E1 component.
    
 
 0.893
SMF55675.1
Tetratricopeptide (TPR) repeat.
  
 0.885
SMF52347.1
Hypothetical protein.
   
 
 0.872
SMF41827.1
Secreted effector protein SseD.
  
  
 0.867
SMF41512.1
Type III secretion regulator YopN/LcrE/InvE/MxiC.
  
  
 0.864
SMF41454.1
Type III secretion protein C.
  
  
 0.856
SMF41699.1
Secreted effector protein SseB.
  
  
 0.854
SMF45810.1
Glutamate synthase (NADH) large subunit.
    
   0.847
SMF41258.1
Type III secretion protein U.
  
  
 0.826
SMF55151.1
PAS domain S-box-containing protein.
  
 
 0.804
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.