STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF36926.1Protein of unknown function. (395 aa)    
Predicted Functional Partners:
SMF05933.1
Regulatory P domain of the subtilisin-like proprotein convertase.
  
 0.996
SMF21518.1
FecR family protein.
  
 
 
 0.856
SMF29200.1
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.823
SME95341.1
Cell division and transport-associated protein TolA.
 
  
 0.821
SMF36957.1
Hypothetical protein.
 
     0.821
SMF76654.1
Iron complex outermembrane recepter protein.
  
 
 
 0.809
SME98048.1
DNA translocase FtsK.
    
 
 0.794
SMF74395.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.794
SMF83589.1
AMP-binding enzyme.
  
 
 0.789
SMF71327.1
Iron complex outermembrane recepter protein.
    
 
 0.782
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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