STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF48584.1Two component transcriptional regulator, Fis family. (229 aa)    
Predicted Functional Partners:
SMF48574.1
Multi-sensor signal transduction histidine kinase.
 
 0.974
SMF48565.1
Protein of unknown function.
 
     0.946
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
      0.899
SMF76573.1
PAS domain S-box-containing protein.
 
 0.890
SMF05779.1
Signal transduction histidine kinase.
 
 0.885
SMF55151.1
PAS domain S-box-containing protein.
 
0.872
SMF13825.1
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
 
 0.870
SMF23683.1
Signal transduction histidine kinase.
 
 0.867
SMF24839.1
Multi-sensor hybrid histidine kinase.
 
 0.850
SME96239.1
Signal transduction histidine kinase.
 
 0.848
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
Server load: low (22%) [HD]