SMF52019.1 protein (Trinickia caryophylli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

SMF52019.1

Flagellar hook-length control protein FliK. (504 aa)

Predicted Functional Partners:

SMF51813.1

0.996

SMF52035.1

0.994

SMF52082.1

0.993

SMF51733.1

0.993

SMF51994.1

0.992

SMF52097.1

0.992

fliE

0.991

SMF51761.1

0.987

SMF51839.1

0.986

SMF51707.1

0.986

Your Current Organism:

Trinickia caryophylli

NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMF51707.1	SMF51733.1	SAMN06295900_1096	SAMN06295900_1098	Flagellar basal-body rod protein FlgB.	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.999
SMF51707.1	SMF51761.1	SAMN06295900_1096	SAMN06295900_10910	Flagellar basal-body rod protein FlgB.	Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.	0.999
SMF51707.1	SMF51813.1	SAMN06295900_1096	SAMN06295900_10914	Flagellar basal-body rod protein FlgB.	Flagellar protein FlgJ.	0.997
SMF51707.1	SMF51839.1	SAMN06295900_1096	SAMN06295900_10916	Flagellar basal-body rod protein FlgB.	Flagellar hook-associated protein 1 FlgK; Belongs to the flagella basal body rod proteins family.	0.992
SMF51707.1	SMF51994.1	SAMN06295900_1096	SAMN06295900_10923	Flagellar basal-body rod protein FlgB.	Flagellar motor switch protein FliM.	0.992
SMF51707.1	SMF52019.1	SAMN06295900_1096	SAMN06295900_10925	Flagellar basal-body rod protein FlgB.	Flagellar hook-length control protein FliK.	0.986
SMF51707.1	SMF52035.1	SAMN06295900_1096	SAMN06295900_10926	Flagellar basal-body rod protein FlgB.	Flagellar FliJ protein.	0.977
SMF51707.1	SMF52082.1	SAMN06295900_1096	SAMN06295900_10929	Flagellar basal-body rod protein FlgB.	Flagellar motor switch protein FliG.	0.992
SMF51707.1	SMF52097.1	SAMN06295900_1096	SAMN06295900_10930	Flagellar basal-body rod protein FlgB.	Flagellar M-ring protein FliF.	0.999
SMF51707.1	fliE	SAMN06295900_1096	SAMN06295900_10931	Flagellar basal-body rod protein FlgB.	Flagellar hook-basal body complex protein FliE.	0.999
SMF51733.1	SMF51707.1	SAMN06295900_1098	SAMN06295900_1096	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar basal-body rod protein FlgB.	0.999
SMF51733.1	SMF51761.1	SAMN06295900_1098	SAMN06295900_10910	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.	0.999
SMF51733.1	SMF51813.1	SAMN06295900_1098	SAMN06295900_10914	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar protein FlgJ.	0.996
SMF51733.1	SMF51839.1	SAMN06295900_1098	SAMN06295900_10916	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar hook-associated protein 1 FlgK; Belongs to the flagella basal body rod proteins family.	0.992
SMF51733.1	SMF51994.1	SAMN06295900_1098	SAMN06295900_10923	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar motor switch protein FliM.	0.992
SMF51733.1	SMF52019.1	SAMN06295900_1098	SAMN06295900_10925	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar hook-length control protein FliK.	0.993
SMF51733.1	SMF52035.1	SAMN06295900_1098	SAMN06295900_10926	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar FliJ protein.	0.970
SMF51733.1	SMF52082.1	SAMN06295900_1098	SAMN06295900_10929	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar motor switch protein FliG.	0.989
SMF51733.1	SMF52097.1	SAMN06295900_1098	SAMN06295900_10930	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar M-ring protein FliF.	0.998
SMF51733.1	fliE	SAMN06295900_1098	SAMN06295900_10931	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar hook-basal body complex protein FliE.	0.998

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Network Stats

number of nodes:

3

number of edges:

3

average node degree:

2

avg. local clustering coefficient:

1

expected number of edges:

2

PPI enrichment p-value:

0.212

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

9 of 120

1.51

2.72

2.32e-10

GO:0010467

Gene expression

11 of 231

1.31

2.24

6.99e-12

GO:0009059

Macromolecule biosynthetic process

10 of 267

1.21

1.78

9.97e-10

GO:0044271

Cellular nitrogen compound biosynthetic process

10 of 450

0.98

1.15

1.07e-07

GO:0034641

Cellular nitrogen compound metabolic process

11 of 975

0.69

0.65

3.56e-06

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

9 of 54

1.86

4.44

3.16e-13

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

9 of 56

1.84

4.52

7.46e-14

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:117

Ribosome, and RNA polymerase

9 of 62

1.8

4.17

5.11e-13

CL:205

Ribosome

5 of 12

2.25

3.88

1.11e-08

CL:121

Ribosome

7 of 54

1.75

3.28

1.09e-09

CL:95

Translation, and Protein export

11 of 168

1.45

2.87

1.78e-13

CL:207

Mixed, incl. L28p-like, and Zinc-binding ribosomal protein

3 of 5

2.41

2.34

3.79e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

daa03010

Ribosome

9 of 52

1.87

4.73

3.11e-14

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

8 of 45

1.88

4.21

7.30e-12

GOCC:0043232

Intracellular non-membrane-bounded organelle

9 of 143

1.43

2.48

2.37e-10

GOCC:1990904

Ribonucleoprotein complex

4 of 30

1.76

1.97

3.80e-05

GOCC:0044391

Ribosomal subunit

3 of 25

1.71

1.38

0.0012

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 9

1.98

1.05

0.0096

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

9 of 56

1.84

4.48

1.16e-13

KW-0694

RNA-binding

3 of 72

1.25

0.61

0.0429

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