STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF52558.1Cytochrome c. (119 aa)    
Predicted Functional Partners:
SMF70717.1
DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.
   
 0.936
SMF52547.1
Osmotically-inducible protein OsmY, contains BON domain.
 
     0.838
msrP
Sulfoxide reductase catalytic subunit YedY; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to re [...]
   
 0.810
SMF62572.1
DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.
   
 0.810
SMF49093.1
NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator.
  
  
 0.779
SMF55252.1
Cytochrome c oxidase subunit 2.
    
 0.755
SMF57966.1
Nitric oxide reductase, NorZ apoprotein.
  
 
 0.742
SMF77856.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
  
  0.740
SMF38038.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.733
SMF55219.1
Heme/copper-type cytochrome/quinol oxidase, subunit 3.
  
 
 0.719
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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