STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF55925.1Glycosyltransferase like family 2. (306 aa)    
Predicted Functional Partners:
SMF55939.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 0.982
SMF55933.1
Hypothetical protein.
 
     0.950
SMF55946.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.945
SMF55915.1
Tyrosine-protein kinase Etk/Wzc.
  
  
 0.836
SMF55901.1
UDP-glucose dehydrogenase.
  
 
 0.832
SMF55675.1
Tetratricopeptide (TPR) repeat.
  
 
 0.815
SMF55908.1
Polysaccharide export outer membrane protein.
     
 0.792
SMF70804.1
Tetratricopeptide repeat-containing protein.
 
 
 0.788
SMF55878.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.773
SMF22347.1
Tfp pilus assembly protein PilF.
 
 
 0.747
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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