STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF58098.1Transcriptional regulator, GntR family. (249 aa)    
Predicted Functional Partners:
SMF40051.1
Transcriptional regulator, GntR family.
  
     0.754
SMF58110.1
L-lactate dehydrogenase complex protein LldG.
 
   
 0.751
SMF66391.1
Transcriptional regulator, GntR family.
  
  
 0.727
SMF16099.1
Transcriptional regulator, GntR family.
  
  
 0.711
SMF17744.1
Transcriptional regulator, GntR family.
  
  
 0.684
SMF16031.1
Transcriptional regulator, GntR family.
  
  
 0.680
SMF58104.1
L-lactate dehydrogenase complex protein LldE.
 
   
 0.670
SMF58118.1
L-lactate dehydrogenase complex protein LldF.
 
   
 0.664
SMF23258.1
Transcriptional regulator, GntR family.
  
  
 0.663
SMF58125.1
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
 0.637
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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