STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF58118.1L-lactate dehydrogenase complex protein LldF. (481 aa)    
Predicted Functional Partners:
SMF58104.1
L-lactate dehydrogenase complex protein LldE.
 0.999
SMF14391.1
L-lactate dehydrogenase complex protein LldE.
 0.996
SMF58110.1
L-lactate dehydrogenase complex protein LldG.
 
 
 0.995
SMF21744.1
L-lactate dehydrogenase complex protein LldG.
 
 0.992
SMF31638.1
Hypothetical protein.
 
 0.926
SMF39335.1
Fe-S oxidoreductase.
  
 0.912
SMF58125.1
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.906
SMF40394.1
Glycolate oxidase iron-sulfur subunit.
 
 0.888
SME94225.1
Glycolate oxidase iron-sulfur subunit.
 
 0.887
SMF55852.1
Fe-S oxidoreductase.
 0.886
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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