STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF58408.1Mannose-6-phosphate isomerase, cupin superfamily. (115 aa)    
Predicted Functional Partners:
SME95708.1
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.924
SMF55878.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
 
 0.924
SMF58410.1
Cyclohexyl-isocyanide hydratase.
 
 
   0.836
SMF70444.1
AraC-like ligand binding domain-containing protein.
 
  0.751
SMF58415.1
Transcriptional regulator, AraC family with amidase-like domain.
 
 
   0.650
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
 
  0.629
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.534
SMF67721.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
    
 0.524
SMF70919.1
Regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.486
SMF25273.1
Transcriptional regulator, RpiR family.
  
  
  0.478
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.