STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF60593.1Hypothetical protein. (248 aa)    
Predicted Functional Partners:
SME96553.1
Iron complex outermembrane recepter protein.
  
 
 0.819
SMF08646.1
Iron complex outermembrane recepter protein.
  
 
 0.819
SMF12616.1
Iron complex outermembrane recepter protein.
  
 
 0.819
SMF25843.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 0.819
SMF82472.1
Iron complex outermembrane recepter protein.
  
 
 0.819
SME95352.1
Cell division and transport-associated protein TolR.
  
 
 0.811
SMF00443.1
Outer membrane transport energization protein ExbD.
  
 
 0.811
SME93157.1
Biopolymer transport protein ExbD.
  
 
 0.811
SMF76680.1
Outer membrane transport energization protein ExbD.
  
 
 0.811
SMF76698.1
Outer membrane transport energization protein ExbD.
  
 
 0.811
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.