STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF60109.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (298 aa)    
Predicted Functional Partners:
SMF60131.1
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
 
 0.987
SMF60159.1
4-amino-4-deoxy-L-arabinose transferase.
 
  
 0.987
SMF60145.1
Small Multidrug Resistance protein.
 
  
 0.983
SMF60125.1
methionyl-tRNA formyltransferase.
 
  
 0.959
SMF60117.1
Nucleoside-diphosphate-sugar epimerase.
 
  
 0.951
SMF60137.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.941
SMF04586.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.831
SMF10313.1
Dolichol-phosphate mannosyltransferase.
 
 
 0.788
SME95279.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.762
SMF60099.1
Peroxiredoxin Q/BCP.
       0.593
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.