STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF64408.1Transcriptional regulator, AraC family. (300 aa)    
Predicted Functional Partners:
SMF70444.1
AraC-like ligand binding domain-containing protein.
 
 
 0.818
SME95647.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.796
SME95687.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.787
SMF23350.1
Transcriptional regulator, AraC family.
  
   0.775
SMF68551.1
Transcriptional regulator, AraC family.
  
     0.762
SMF15674.1
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.730
SMF58681.1
Transcriptional regulator, AraC family.
  
   0.710
SMF55151.1
PAS domain S-box-containing protein.
    
 0.691
SMF41687.1
Transcriptional regulator, AraC family.
  
     0.676
SMF78646.1
AraC-type DNA-binding protein.
  
     0.665
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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