STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF62491.1Type VI secretion system protein ImpK. (241 aa)    
Predicted Functional Partners:
SMF62476.1
Type VI secretion system protein ImpJ.
 
  
 0.968
SMF62418.1
Type VI secretion system protein ImpC.
 
  
 0.938
SME94707.1
Type VI secretion system protein ImpC.
 
  
 0.929
SMF62428.1
Type VI secretion system protein ImpB.
 
  
 0.929
SMF62502.1
OmpA family protein.
 
 
 0.921
SMF62512.1
Type VI secretion system secreted protein Hcp.
 
  
 0.920
SMF09258.1
Type VI secretion protein, EvpB/VC_A0108 family/type VI secretion protein, VC_A0107 family.
 
  
 0.918
SME94698.1
Type VI secretion system protein ImpB.
 
  
 0.914
SMF62547.1
Type VI secretion system protein.
 
  
 0.912
SMF15113.1
Type VI secretion system protein VasD.
 
  
 0.873
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.