STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF65308.1Carbohydrate ABC transporter substrate-binding protein, CUT1 family. (450 aa)    
Predicted Functional Partners:
SMF65291.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 0.998
SMF65281.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.992
SMF42331.1
Sorbitol ABC transporter membrane protein.
 
 0.973
SMF42327.1
Sorbitol ABC transporter membrane protein.
 
 0.945
SMF10035.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.934
SMF65320.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
 0.924
SMF00237.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.917
SMF10037.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.917
SMF10241.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.916
SMF10248.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.916
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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