STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF68918.1Bacterioferritin. (187 aa)    
Predicted Functional Partners:
SMF82184.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.878
SMF00456.1
Bacterioferritin-associated ferredoxin.
  
 
 0.869
SMF68866.1
Protein of unknown function.
  
    0.851
SMF00479.1
Bacterioferritin; Iron-storage protein.
  
  
  0.798
SMF23658.1
HAMP domain-containing protein.
   
  
 0.736
SME99835.1
Transcriptional regulator, MerR family.
   
  
 0.714
SMF08201.1
rsbT co-antagonist protein RsbR.
   
  
 0.697
SMF08223.1
rsbT antagonist protein RsbS.
   
  
 0.697
SMF25112.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
   
  
 0.697
SMF68439.1
Anti-anti-sigma factor.
   
  
 0.697
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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