STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF68132.1Carbon-monoxide dehydrogenase medium subunit. (266 aa)    
Predicted Functional Partners:
SMF37602.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 
 0.999
SMF68112.1
Carbon-monoxide dehydrogenase small subunit.
 0.998
SMF68125.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 
 0.997
SMF30438.1
Xanthine dehydrogenase YagT iron-sulfur-binding subunit.
 0.991
SMF30469.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 
 0.984
SMF68163.1
Predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis.
 
 
 0.970
SMF83084.1
Aerobic-type carbon monoxide dehydrogenase, small subunit, CoxS/CutS family.
 0.965
SMF68157.1
Hypothetical protein.
 
 
 0.964
SMF70399.1
Isoquinoline 1-oxidoreductase, alpha subunit.
 0.957
SMF68143.1
MoxR-like ATPase.
 
   
 0.948
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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