STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF68284.1Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa)    
Predicted Functional Partners:
SMF83589.1
AMP-binding enzyme.
  
 0.838
SMF83721.1
AMP-binding enzyme.
   
 0.832
SMF55660.1
Acyl carrier protein.
   
 0.795
SME97461.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.772
SMF53209.1
Phosphopantetheine attachment site.
  
 
 0.759
SMF83447.1
HxxPF-repeated domain-containing protein.
  
 
 0.759
SMF83454.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.759
SMF84171.1
Amino acid adenylation domain-containing protein.
  
 
 0.759
SMF70129.1
DNA-N1-methyladenine dioxygenase.
 
      0.756
SMF70042.1
Phosphopantetheine attachment site.
   
 0.738
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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