STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF72890.1DNA sulfur modification protein DndE. (128 aa)    
Predicted Functional Partners:
SMF72862.1
DNA sulfur modification protein DndD.
 
   
 0.961
SMF72799.1
DNA sulfur modification protein DndB.
 
   
 0.940
SMF72835.1
DNA sulfur modification protein DndC.
 
   
 0.938
SMF72790.1
DNA phosphorothioation-associated putative methyltransferase.
 
     0.725
SMF57765.1
PAS domain S-box-containing protein.
  
     0.554
SMF53244.1
Hypothetical protein.
  
     0.523
SMF55925.1
Glycosyltransferase like family 2.
  
     0.511
SMF04212.1
ATP adenylyltransferase.
  
     0.504
SMF44937.1
Hypothetical protein.
  
     0.498
SMF60576.1
Hypothetical protein.
  
     0.476
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.