STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF76120.1uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (258 aa)    
Predicted Functional Partners:
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
 0.998
SMF46182.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.980
SMF55169.1
cob(II)yrinic acid a,c-diamide reductase.
   
 0.960
SMF76127.1
Sirohydrochlorin cobaltochelatase.
 
 
 0.946
SMF70230.1
Precorrin-3 methyltransferase.
 
 0.932
SMF70246.1
precorrin-3B synthase.
 
  
 0.927
SMF82879.1
Sulfite reductase (NADPH) beta subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.925
SMF70234.1
Precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase; Methylates precorrin-2 at the C-20 position to produce precorrin-3A.
 
 
 0.923
SMF82889.1
Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite.
 
  
 0.916
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
  
 0.884
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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