STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF76279.1Chromosome partitioning protein. (207 aa)    
Predicted Functional Partners:
SMF73428.1
Chromosome segregation DNA-binding protein; Belongs to the ParB family.
  
 
 0.896
SMF63848.1
ParB family protein; Belongs to the ParB family.
  
 
 0.881
SMF08950.1
ParB-like nuclease domain-containing protein.
  
 
 0.879
SMF67633.1
Cellulose biosynthesis protein BcsE.
  
 
 0.852
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 
 0.709
SMF00256.1
Iron complex outermembrane recepter protein.
    
 
 0.697
SMF50086.1
Iron complex outermembrane recepter protein.
    
 
 0.697
SMF76223.1
Vitamin B12 transporter.
    
 
 0.697
SME94584.1
Regulatory inactivation of DnaA Hda protein; Belongs to the DnaA family.
  
 
 0.688
SME94204.1
Matrixin.
    
 
 0.641
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.