STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF79772.1Transcriptional regulator, IclR family. (258 aa)    
Predicted Functional Partners:
SME99840.1
Transcriptional regulator, IclR family.
  
     0.769
SME92766.1
Transcriptional regulator, IclR family.
  
     0.761
SMF63446.1
Transcriptional regulator, IclR family.
  
     0.759
SME95530.1
Transcriptional regulator, IclR family.
  
     0.747
SMF14383.1
Transcriptional regulator, IclR family.
  
     0.732
SMF29545.1
Transcriptional regulator, IclR family.
  
     0.696
SMF74673.1
Transcriptional regulator, IclR family.
  
     0.696
SMF79773.1
Transcriptional regulator, TetR family.
       0.613
SMF59761.1
Phosphotransacetylase.
    
 0.602
SMF36017.1
Indolepyruvate ferredoxin oxidoreductase.
    
  0.597
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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