STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF82184.1Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (905 aa)    
Predicted Functional Partners:
SMF82172.1
Assimilatory nitrite reductase (NAD(P)H) large subunit precursor; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.998
SMF12918.1
Ni,Fe-hydrogenase III large subunit.
  
 
 0.994
SMF82179.1
Assimilatory nitrite reductase (NAD(P)H) small subunit.
 
 
 0.985
SMF82194.1
Nitrate/nitrite transport system substrate-binding protein.
 
 
 0.984
SMF08434.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
 
 0.970
SMF22399.1
Formate dehydrogenase alpha subunit.
 
0.967
SMF62737.1
Formate dehydrogenase (quinone-dependent) catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
0.964
SMF22425.1
Formate dehydrogenase gamma subunit.
  
 0.963
SMF22379.1
Formate dehydrogenase delta subunit.
  
 0.962
SMF32498.1
Ferredoxin III, nif-specific.
   
 0.947
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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